[2026-05-07T13:59:30+0200] [MainThread] [I] [toil.worker] ---TOIL WORKER OUTPUT LOG---
[2026-05-07T13:59:30+0200] [MainThread] [I] [toil] Running Toil version 9.1.2-355b72ba0e425619c0367562caf2a337078dba65 on host wn-la-06.spider.surfsara.nl.
[2026-05-07T13:59:30+0200] [MainThread] [I] [toil.worker] Working on job 'CWLJob' finalize.uvplot.uvplot kind-CWLJob/instance-aly7v762 v1
/project/ldv/Software/executor-venv-toil9/lib/python3.9/site-packages/pydantic/_internal/_generate_schema.py:2249: UnsupportedFieldAttributeWarning: The 'default' attribute with value None was provided to the `Field()` function, which has no effect in the context it was used. 'default' is field-specific metadata, and can only be attached to a model field using `Annotated` metadata or by assignment. This may have happened because an `Annotated` type alias using the `type` statement was used, or if the `Field()` function was attached to a single member of a union type.
  warnings.warn(
[2026-05-07T13:59:32+0200] [MainThread] [I] [toil.worker] Loaded body Job('CWLJob' finalize.uvplot.uvplot kind-CWLJob/instance-aly7v762 v1) from description 'CWLJob' finalize.uvplot.uvplot kind-CWLJob/instance-aly7v762 v1
Warning: invalid field 'nameroot', expected one of: 'class', 'location', 'path', 'basename', 'listing'
[2026-05-07T13:59:32+0200] [MainThread] [W] [salad] Warning: invalid field 'nameroot', expected one of: 'class', 'location', 'path', 'basename', 'listing'
Warning: invalid field 'nameext', expected one of: 'class', 'location', 'path', 'basename', 'listing'
[2026-05-07T13:59:32+0200] [MainThread] [W] [salad] Warning: invalid field 'nameext', expected one of: 'class', 'location', 'path', 'basename', 'listing'
Warning: invalid field 'nameroot', expected one of: 'class', 'location', 'path', 'basename', 'listing'
[2026-05-07T13:59:32+0200] [MainThread] [W] [salad] Warning: invalid field 'nameroot', expected one of: 'class', 'location', 'path', 'basename', 'listing'
Warning: invalid field 'nameext', expected one of: 'class', 'location', 'path', 'basename', 'listing'
[2026-05-07T13:59:32+0200] [MainThread] [W] [salad] Warning: invalid field 'nameext', expected one of: 'class', 'location', 'path', 'basename', 'listing'
[2026-05-07T13:59:32+0200] [MainThread] [W] [cwltool] You have specified '--preserve-entire-environment' while running a container which will override variables set in the container. This may break the container, be non-portable, and/or affect reproducibility.
[2026-05-07T13:59:32+0200] [MainThread] [I] [cwltool] Using local copy of Singularity image found in /project/ldv/Share/run-test/workflows/linc_target_stable_april2026/workflows
[2026-05-07T13:59:32+0200] [MainThread] [I] [cwltool] [job finalize.uvplot.uvplot] /project/ldv/Share/cache/tmp/tmpu90998s7$ singularity \
    --quiet \
    run \
    --contain \
    --ipc \
    --cleanenv \
    --no-eval \
    --userns \
    --home \
    /project/ldv/Share/cache/tmp/tmpu90998s7:/vOIXQP \
    --mount=type=bind,source=/tmp/tmpb59wrwet,target=/tmp \
    --mount=type=bind,source=/project/ldv/Share/cache/tmp/tmphocqpqe6/L102600000335_136MHz_uv_pre-cal.ms,target=/var/lib/cwl/stg3e5c3953-421b-436f-ade9-39d2a4532d6a/L102600000335_136MHz_uv_pre-cal.ms,readonly \
    --mount=type=bind,source=/project/ldv/Share/cache/tmp/tmp4upt8por/L102600000335_172MHz_uv_pre-cal.ms,target=/var/lib/cwl/stgaf26dc4d-bf1b-4fcc-9dc3-72796c893f59/L102600000335_172MHz_uv_pre-cal.ms,readonly \
    --pwd \
    /vOIXQP \
    --net \
    --network \
    none \
    /project/ldv/Share/run-test/workflows/linc_target_stable_april2026/workflows/astronrd_linc_latest.sif \
    /bin/sh \
    -c \
    plot_uvcov.py --wideband True --antennas -1 --limits ,,, --output P18Hetdex03_uv-coverage.png --timeslots 0,20,0 --title uv\ coverage\ of\ the\ target\ pointing:\ P18Hetdex03 /var/lib/cwl/stg3e5c3953-421b-436f-ade9-39d2a4532d6a/L102600000335_136MHz_uv_pre-cal.ms /var/lib/cwl/stgaf26dc4d-bf1b-4fcc-9dc3-72796c893f59/L102600000335_172MHz_uv_pre-cal.ms > /project/ldv/Share/cache/tmp/tmpu90998s7/uvplot.log 2> /project/ldv/Share/cache/tmp/tmpu90998s7/uvplot_err.log
[2026-05-07T14:01:09+0200] [MainThread] [I] [cwltool] [job finalize.uvplot.uvplot] completed success
[2026-05-07T14:01:09+0200] [MainThread] [I] [toil.fileStores.abstractFileStore] LOG-TO-LEADER: CWL step complete: finalize.uvplot.uvplot
[2026-05-07T14:01:09+0200] [MainThread] [I] [toil.worker] Completed body for 'CWLJob' finalize.uvplot.uvplot kind-CWLJob/instance-aly7v762 v3
[2026-05-07T14:01:09+0200] [MainThread] [I] [toil.worker] Chaining from 'CWLJob' finalize.uvplot.uvplot kind-CWLJob/instance-aly7v762 v3 to 'CWLJob' finalize.concat_logfiles_uvplot.concatfiles kind-CWLJob/instance-rov9pa0m v1
[2026-05-07T14:01:09+0200] [MainThread] [I] [toil.worker] Working on job 'CWLJob' finalize.concat_logfiles_uvplot.concatfiles kind-CWLJob/instance-aly7v762 v4
[2026-05-07T14:01:09+0200] [MainThread] [I] [toil.worker] Loaded body Job('CWLJob' finalize.concat_logfiles_uvplot.concatfiles kind-CWLJob/instance-aly7v762 v4) from description 'CWLJob' finalize.concat_logfiles_uvplot.concatfiles kind-CWLJob/instance-aly7v762 v4
[2026-05-07T14:01:09+0200] [MainThread] [I] [cwltool] [job finalize.concat_logfiles_uvplot.concatfiles] /project/ldv/Share/cache/tmp/tmpa8nb30b1$ bash \
    bulk_rename.sh \
    /tmp/tmpq853i8o8/stg3c41915e-beb7-4946-b517-cb30feb67238/uvplot.log \
    /tmp/tmpq853i8o8/stg7834a371-493b-467f-b3c1-e44ee78160b1/uvplot_err.log
[2026-05-07T14:01:09+0200] [MainThread] [I] [cwltool] [job finalize.concat_logfiles_uvplot.concatfiles] completed success
[2026-05-07T14:01:09+0200] [MainThread] [I] [toil.fileStores.abstractFileStore] LOG-TO-LEADER: CWL step complete: finalize.concat_logfiles_uvplot.concatfiles
[2026-05-07T14:01:09+0200] [MainThread] [I] [toil.worker] Completed body for 'CWLJob' finalize.concat_logfiles_uvplot.concatfiles kind-CWLJob/instance-aly7v762 v6
[2026-05-07T14:01:09+0200] [MainThread] [I] [toil.worker] Not chaining from job 'CWLJob' finalize.concat_logfiles_uvplot.concatfiles kind-CWLJob/instance-aly7v762 v6
[2026-05-07T14:01:09+0200] [MainThread] [I] [toil.worker] Worker log can be found at /tmp/toilwf-35dc7a2bc2eb5b4ca063ec3f2d3aa935/edc1. Set --cleanWorkDir to retain this log
[2026-05-07T14:01:09+0200] [MainThread] [I] [toil.worker] Finished running the chain of jobs on this node, we ran for a total of 98.984611 seconds