[2026-05-13T18:41:14+0200] [MainThread] [I] [toil.worker] ---TOIL WORKER OUTPUT LOG---
[2026-05-13T18:41:14+0200] [MainThread] [I] [toil] Running Toil version 9.1.2-355b72ba0e425619c0367562caf2a337078dba65 on host wn-dc-06.spider.surfsara.nl.
[2026-05-13T18:41:14+0200] [MainThread] [I] [toil.worker] Working on job 'CWLJob' psrfits_requantisation.cwl.requantise.requantize.cwl kind-CWLJob/instance-ctmo8a_e v1
/project/ldv/Software/executor-venv-toil9/lib/python3.9/site-packages/pydantic/_internal/_generate_schema.py:2249: UnsupportedFieldAttributeWarning: The 'default' attribute with value None was provided to the `Field()` function, which has no effect in the context it was used. 'default' is field-specific metadata, and can only be attached to a model field using `Annotated` metadata or by assignment. This may have happened because an `Annotated` type alias using the `type` statement was used, or if the `Field()` function was attached to a single member of a union type.
  warnings.warn(
[2026-05-13T18:41:15+0200] [MainThread] [I] [toil.worker] Loaded body Job('CWLJob' psrfits_requantisation.cwl.requantise.requantize.cwl kind-CWLJob/instance-ctmo8a_e v1) from description 'CWLJob' psrfits_requantisation.cwl.requantise.requantize.cwl kind-CWLJob/instance-ctmo8a_e v1
[2026-05-13T18:41:16+0200] [MainThread] [W] [cwltool] You have specified '--preserve-entire-environment' while running a container which will override variables set in the container. This may break the container, be non-portable, and/or affect reproducibility.
[2026-05-13T18:41:16+0200] [MainThread] [I] [cwltool] Using local copy of Singularity image found in /project/ldv/Share/run-test/workflows/psrfits_requantisation/workflow
[2026-05-13T18:41:48+0200] [MainThread] [I] [cwltool] [job psrfits_requantisation.cwl.requantise.requantize.cwl] /project/ldv/Share/cache/tmp/tmpk4uqqg0e$ singularity \
    --quiet \
    run \
    --contain \
    --ipc \
    --cleanenv \
    --no-eval \
    --userns \
    --home \
    /project/ldv/Share/cache/tmp/tmpk4uqqg0e:/DyRxcu \
    --mount=type=bind,source=/tmp/tmpmrlb2sa7,target=/tmp \
    --pwd \
    /DyRxcu \
    --net \
    --network \
    none \
    /project/ldv/Share/run-test/workflows/psrfits_requantisation/workflow/git.astron.nl:5000_ldv_bf_double_tgz:v0.5.7.sif \
    psrfits_requantisation \
    L427020_SAP000_B000_S0_P000_bf.tar
[2026-05-13T18:49:57+0200] [MainThread] [I] [cwltool] [job psrfits_requantisation.cwl.requantise.requantize.cwl] completed success
[2026-05-13T18:49:57+0200] [MainThread] [I] [toil.fileStores.abstractFileStore] LOG-TO-LEADER: CWL step complete: psrfits_requantisation.cwl.requantise.requantize.cwl
[2026-05-13T18:49:57+0200] [MainThread] [I] [toil.worker] Completed body for 'CWLJob' psrfits_requantisation.cwl.requantise.requantize.cwl kind-CWLJob/instance-ctmo8a_e v2
[2026-05-13T18:49:57+0200] [MainThread] [I] [toil.worker] Not chaining from job 'CWLJob' psrfits_requantisation.cwl.requantise.requantize.cwl kind-CWLJob/instance-ctmo8a_e v2
[2026-05-13T18:49:57+0200] [MainThread] [I] [toil.worker] Worker log can be found at /tmp/toilwf-a44caeded4ec5355adf0b8e5863c26ec/1ecc. Set --cleanWorkDir to retain this log
[2026-05-13T18:49:57+0200] [MainThread] [I] [toil.worker] Finished running the chain of jobs on this node, we ran for a total of 522.900419 seconds