[2026-05-01T16:40:53+0200] [MainThread] [I] [toil.worker] ---TOIL WORKER OUTPUT LOG---
[2026-05-01T16:40:53+0200] [MainThread] [I] [toil] Running Toil version 9.1.2-355b72ba0e425619c0367562caf2a337078dba65 on host wn-dc-09.spider.surfsara.nl.
[2026-05-01T16:40:53+0200] [MainThread] [I] [toil.worker] Working on job 'CWLJob' predict_calibrate.predict.predict kind-CWLJob/instance-3u61du47 v1
/project/ldv/Software/executor-venv-toil9/lib/python3.9/site-packages/pydantic/_internal/_generate_schema.py:2249: UnsupportedFieldAttributeWarning: The 'default' attribute with value None was provided to the `Field()` function, which has no effect in the context it was used. 'default' is field-specific metadata, and can only be attached to a model field using `Annotated` metadata or by assignment. This may have happened because an `Annotated` type alias using the `type` statement was used, or if the `Field()` function was attached to a single member of a union type.
  warnings.warn(
[2026-05-01T16:40:53+0200] [MainThread] [I] [toil.worker] Loaded body Job('CWLJob' predict_calibrate.predict.predict kind-CWLJob/instance-3u61du47 v1) from description 'CWLJob' predict_calibrate.predict.predict kind-CWLJob/instance-3u61du47 v1
[2026-05-01T16:40:53+0200] [MainThread] [W] [cwltool] You have specified '--preserve-entire-environment' while running a container which will override variables set in the container. This may break the container, be non-portable, and/or affect reproducibility.
[2026-05-01T16:40:54+0200] [MainThread] [I] [cwltool] Using local copy of Singularity image found in /project/ldv/Share/run-test/workflows/linc_calibrator_master/workflows
[2026-05-01T16:40:54+0200] [MainThread] [I] [cwltool] [job predict_calibrate.predict.predict] /project/ldv/Share/cache/tmp/tmpxq314jx9$ singularity \
    --quiet \
    run \
    --contain \
    --ipc \
    --cleanenv \
    --no-eval \
    --userns \
    --home \
    /project/ldv/Share/cache/tmp/tmpxq314jx9:/ugnHTG \
    --mount=type=bind,source=/tmp/tmpcmsqb1cp,target=/tmp \
    --mount=type=bind,source=/project/ldv/Share/cache/tmp/tmpv34ea0t1/3C295-sweijen.skymodel,target=/var/lib/cwl/stgd6f144d7-b164-4024-8dba-9d8be6dfcdd0/3C295-sweijen.skymodel,readonly \
    --mount=type=bind,source=/project/ldv/Share/cache/tmp/tmpf9ula16w/out_L102600000318_SB003_uv.MS,target=/ugnHTG/out_L102600000318_SB003_uv.MS \
    --pwd \
    /ugnHTG \
    --net \
    --network \
    none \
    /project/ldv/Share/run-test/workflows/linc_calibrator_master/workflows/astronrd_linc_latest.sif \
    DP3 \
    steps=[predict,count] \
    msout=. \
    predict.beammode=array_factor \
    msout.storagemanager.databitrate=0 \
    numthreads=9 \
    msin=/ugnHTG/out_L102600000318_SB003_uv.MS \
    msin.datacolumn=SMOOTHED_DATA \
    msout.datacolumn=MODEL_DATA \
    predict.sourcedb=/var/lib/cwl/stgd6f144d7-b164-4024-8dba-9d8be6dfcdd0/3C295-sweijen.skymodel \
    msout.storagemanager=Dysco > /project/ldv/Share/cache/tmp/tmpxq314jx9/predict_cal.log 2> /project/ldv/Share/cache/tmp/tmpxq314jx9/predict_cal_err.log
[2026-05-01T16:40:59+0200] [MainThread] [I] [cwltool] [job predict_calibrate.predict.predict] completed success
[2026-05-01T16:40:59+0200] [MainThread] [I] [toil.fileStores.abstractFileStore] LOG-TO-LEADER: CWL step complete: predict_calibrate.predict.predict
[2026-05-01T16:40:59+0200] [MainThread] [I] [toil.worker] Completed body for 'CWLJob' predict_calibrate.predict.predict kind-CWLJob/instance-3u61du47 v2
[2026-05-01T16:40:59+0200] [MainThread] [I] [toil.worker] Not chaining from job 'CWLJob' predict_calibrate.predict.predict kind-CWLJob/instance-3u61du47 v2
[2026-05-01T16:40:59+0200] [MainThread] [I] [toil.worker] Worker log can be found at /tmp/toilwf-ca48e8243722563fb572d390d150ecc2/614b. Set --cleanWorkDir to retain this log
[2026-05-01T16:40:59+0200] [MainThread] [I] [toil.worker] Finished running the chain of jobs on this node, we ran for a total of 6.522801 seconds