[2026-05-01T16:40:46+0200] [MainThread] [I] [toil.worker] ---TOIL WORKER OUTPUT LOG---
[2026-05-01T16:40:46+0200] [MainThread] [I] [toil] Running Toil version 9.1.2-355b72ba0e425619c0367562caf2a337078dba65 on host wn-dc-09.spider.surfsara.nl.
[2026-05-01T16:40:46+0200] [MainThread] [I] [toil.worker] Working on job 'CWLJob' predict_calibrate.BLsmooth.blsmooth kind-CWLJob/instance-97rza1z4 v1
/project/ldv/Software/executor-venv-toil9/lib/python3.9/site-packages/pydantic/_internal/_generate_schema.py:2249: UnsupportedFieldAttributeWarning: The 'default' attribute with value None was provided to the `Field()` function, which has no effect in the context it was used. 'default' is field-specific metadata, and can only be attached to a model field using `Annotated` metadata or by assignment. This may have happened because an `Annotated` type alias using the `type` statement was used, or if the `Field()` function was attached to a single member of a union type.
  warnings.warn(
[2026-05-01T16:40:47+0200] [MainThread] [I] [toil.worker] Loaded body Job('CWLJob' predict_calibrate.BLsmooth.blsmooth kind-CWLJob/instance-97rza1z4 v1) from description 'CWLJob' predict_calibrate.BLsmooth.blsmooth kind-CWLJob/instance-97rza1z4 v1
[2026-05-01T16:40:47+0200] [MainThread] [W] [cwltool] You have specified '--preserve-entire-environment' while running a container which will override variables set in the container. This may break the container, be non-portable, and/or affect reproducibility.
[2026-05-01T16:40:48+0200] [MainThread] [I] [cwltool] Using local copy of Singularity image found in /project/ldv/Share/run-test/workflows/linc_calibrator_master/workflows
[2026-05-01T16:40:48+0200] [MainThread] [I] [cwltool] [job predict_calibrate.BLsmooth.blsmooth] /project/ldv/Share/cache/tmp/tmp3x4wthix$ singularity \
    --quiet \
    run \
    --contain \
    --ipc \
    --cleanenv \
    --no-eval \
    --userns \
    --home \
    /project/ldv/Share/cache/tmp/tmp3x4wthix:/CfFoOs \
    --mount=type=bind,source=/tmp/tmp61luqfps,target=/tmp \
    --mount=type=bind,source=/project/ldv/Share/cache/tmp/tmpmpeyizc8/out_L102600000318_SB002_uv.MS,target=/CfFoOs/out_L102600000318_SB002_uv.MS \
    --pwd \
    /CfFoOs \
    --net \
    --network \
    none \
    /project/ldv/Share/run-test/workflows/linc_calibrator_master/workflows/astronrd_linc_latest.sif \
    BLsmooth.py \
    -s \
    1.0 \
    -c \
    8 \
    -S \
    False \
    -i \
    DATA \
    -f \
    0.01 \
    -n \
    4 \
    -o \
    SMOOTHED_DATA \
    /CfFoOs/out_L102600000318_SB002_uv.MS 2> /project/ldv/Share/cache/tmp/tmp3x4wthix/BLsmooth.log
[2026-05-01T16:40:50+0200] [MainThread] [I] [cwltool] [job predict_calibrate.BLsmooth.blsmooth] completed success
[2026-05-01T16:40:50+0200] [MainThread] [I] [toil.fileStores.abstractFileStore] LOG-TO-LEADER: CWL step complete: predict_calibrate.BLsmooth.blsmooth
[2026-05-01T16:40:50+0200] [MainThread] [W] [toil.fileStores.abstractFileStore] LOG-TO-LEADER: Job 'CWLJob' predict_calibrate.BLsmooth.blsmooth kind-CWLJob/instance-97rza1z4 v2 used 1.48x more CPU than the requested 1 cores. Consider increasing the job's required CPU cores or limiting the number of processes/threads launched.
[2026-05-01T16:40:50+0200] [MainThread] [I] [toil.worker] Completed body for 'CWLJob' predict_calibrate.BLsmooth.blsmooth kind-CWLJob/instance-97rza1z4 v2
[2026-05-01T16:40:50+0200] [MainThread] [I] [toil.worker] Not chaining from job 'CWLJob' predict_calibrate.BLsmooth.blsmooth kind-CWLJob/instance-97rza1z4 v2
[2026-05-01T16:40:50+0200] [MainThread] [I] [toil.worker] Worker log can be found at /tmp/toilwf-ca48e8243722563fb572d390d150ecc2/9e00. Set --cleanWorkDir to retain this log
[2026-05-01T16:40:50+0200] [MainThread] [I] [toil.worker] Finished running the chain of jobs on this node, we ran for a total of 3.921027 seconds