[2026-04-28T13:37:06+0200] [MainThread] [I] [toil.worker] ---TOIL WORKER OUTPUT LOG---
[2026-04-28T13:37:06+0200] [MainThread] [I] [toil] Running Toil version 9.1.2-355b72ba0e425619c0367562caf2a337078dba65 on host wn-la-10.spider.surfsara.nl.
[2026-04-28T13:37:06+0200] [MainThread] [I] [toil.worker] Working on job 'CWLJob' finalize.uvplot.uvplot kind-CWLJob/instance-zytgmyx3 v1
/project/ldv/Software/executor-venv-toil9/lib/python3.9/site-packages/pydantic/_internal/_generate_schema.py:2249: UnsupportedFieldAttributeWarning: The 'default' attribute with value None was provided to the `Field()` function, which has no effect in the context it was used. 'default' is field-specific metadata, and can only be attached to a model field using `Annotated` metadata or by assignment. This may have happened because an `Annotated` type alias using the `type` statement was used, or if the `Field()` function was attached to a single member of a union type.
  warnings.warn(
[2026-04-28T13:37:07+0200] [MainThread] [I] [toil.worker] Loaded body Job('CWLJob' finalize.uvplot.uvplot kind-CWLJob/instance-zytgmyx3 v1) from description 'CWLJob' finalize.uvplot.uvplot kind-CWLJob/instance-zytgmyx3 v1
Warning: invalid field 'nameroot', expected one of: 'class', 'location', 'path', 'basename', 'listing'
[2026-04-28T13:37:08+0200] [MainThread] [W] [salad] Warning: invalid field 'nameroot', expected one of: 'class', 'location', 'path', 'basename', 'listing'
Warning: invalid field 'nameext', expected one of: 'class', 'location', 'path', 'basename', 'listing'
[2026-04-28T13:37:08+0200] [MainThread] [W] [salad] Warning: invalid field 'nameext', expected one of: 'class', 'location', 'path', 'basename', 'listing'
[2026-04-28T13:37:08+0200] [MainThread] [W] [cwltool] You have specified '--preserve-entire-environment' while running a container which will override variables set in the container. This may break the container, be non-portable, and/or affect reproducibility.
[2026-04-28T13:37:08+0200] [MainThread] [I] [cwltool] Using local copy of Singularity image found in /project/ldv/Share/run-test/workflows/linc_target_stable_april2026/workflows
[2026-04-28T13:37:08+0200] [MainThread] [I] [cwltool] [job finalize.uvplot.uvplot] /project/ldv/Share/cache/tmp/tmpjzg8zkaj$ singularity \
    --quiet \
    run \
    --contain \
    --ipc \
    --cleanenv \
    --no-eval \
    --userns \
    --home \
    /project/ldv/Share/cache/tmp/tmpjzg8zkaj:/buLsJV \
    --mount=type=bind,source=/tmp/tmpz5yjh01q,target=/tmp \
    --mount=type=bind,source=/project/ldv/Share/cache/tmp/tmpewioujia/L102600000295_122MHz_uv_pre-cal.ms,target=/var/lib/cwl/stg5b26aa37-1f38-40a3-9196-dacfa30e9b80/L102600000295_122MHz_uv_pre-cal.ms,readonly \
    --pwd \
    /buLsJV \
    --net \
    --network \
    none \
    /project/ldv/Share/run-test/workflows/linc_target_stable_april2026/workflows/astronrd_linc_latest.sif \
    /bin/sh \
    -c \
    plot_uvcov.py --wideband True --antennas -1 --limits ,,, --output RSOph_uv-coverage.png --timeslots 0,20,0 --title uv\ coverage\ of\ the\ target\ pointing:\ RSOph /var/lib/cwl/stg5b26aa37-1f38-40a3-9196-dacfa30e9b80/L102600000295_122MHz_uv_pre-cal.ms > /project/ldv/Share/cache/tmp/tmpjzg8zkaj/uvplot.log 2> /project/ldv/Share/cache/tmp/tmpjzg8zkaj/uvplot_err.log
[2026-04-28T13:37:32+0200] [MainThread] [I] [cwltool] [job finalize.uvplot.uvplot] completed success
[2026-04-28T13:37:32+0200] [MainThread] [I] [toil.fileStores.abstractFileStore] LOG-TO-LEADER: CWL step complete: finalize.uvplot.uvplot
[2026-04-28T13:37:32+0200] [MainThread] [I] [toil.worker] Completed body for 'CWLJob' finalize.uvplot.uvplot kind-CWLJob/instance-zytgmyx3 v3
[2026-04-28T13:37:32+0200] [MainThread] [I] [toil.worker] Chaining from 'CWLJob' finalize.uvplot.uvplot kind-CWLJob/instance-zytgmyx3 v3 to 'CWLJob' finalize.concat_logfiles_uvplot.concatfiles kind-CWLJob/instance-bbabmu_o v1
[2026-04-28T13:37:32+0200] [MainThread] [I] [toil.worker] Working on job 'CWLJob' finalize.concat_logfiles_uvplot.concatfiles kind-CWLJob/instance-zytgmyx3 v4
[2026-04-28T13:37:33+0200] [MainThread] [I] [toil.worker] Loaded body Job('CWLJob' finalize.concat_logfiles_uvplot.concatfiles kind-CWLJob/instance-zytgmyx3 v4) from description 'CWLJob' finalize.concat_logfiles_uvplot.concatfiles kind-CWLJob/instance-zytgmyx3 v4
[2026-04-28T13:37:33+0200] [MainThread] [I] [cwltool] [job finalize.concat_logfiles_uvplot.concatfiles] /project/ldv/Share/cache/tmp/tmpcfo_y9qk$ bash \
    bulk_rename.sh \
    /tmp/tmp5unnlu6m/stg436f4d20-b09c-4699-8cb0-555bbac145fc/uvplot.log \
    /tmp/tmp5unnlu6m/stg728af91d-16de-46d1-82b5-1312903c7a17/uvplot_err.log
[2026-04-28T13:37:33+0200] [MainThread] [I] [cwltool] [job finalize.concat_logfiles_uvplot.concatfiles] completed success
[2026-04-28T13:37:33+0200] [MainThread] [I] [toil.fileStores.abstractFileStore] LOG-TO-LEADER: CWL step complete: finalize.concat_logfiles_uvplot.concatfiles
[2026-04-28T13:37:33+0200] [MainThread] [I] [toil.worker] Completed body for 'CWLJob' finalize.concat_logfiles_uvplot.concatfiles kind-CWLJob/instance-zytgmyx3 v6
[2026-04-28T13:37:33+0200] [MainThread] [I] [toil.worker] Not chaining from job 'CWLJob' finalize.concat_logfiles_uvplot.concatfiles kind-CWLJob/instance-zytgmyx3 v6
[2026-04-28T13:37:33+0200] [MainThread] [I] [toil.worker] Worker log can be found at /tmp/toilwf-139f7142fb20574c98b3c36616f45f8e/9e7e. Set --cleanWorkDir to retain this log
[2026-04-28T13:37:33+0200] [MainThread] [I] [toil.worker] Finished running the chain of jobs on this node, we ran for a total of 26.436130 seconds