[2026-04-17T06:43:45+0200] [MainThread] [I] [toil.worker] ---TOIL WORKER OUTPUT LOG---
[2026-04-17T06:43:45+0200] [MainThread] [I] [toil] Running Toil version 9.1.2-355b72ba0e425619c0367562caf2a337078dba65 on host wn-la-09.spider.surfsara.nl.
[2026-04-17T06:43:46+0200] [MainThread] [I] [toil.worker] Working on job 'CWLJob' finalize.12.average kind-CWLJob/instance-wv6h4s3c v1
/project/ldv/Software/executor-venv-toil9/lib/python3.9/site-packages/pydantic/_internal/_generate_schema.py:2249: UnsupportedFieldAttributeWarning: The 'default' attribute with value None was provided to the `Field()` function, which has no effect in the context it was used. 'default' is field-specific metadata, and can only be attached to a model field using `Annotated` metadata or by assignment. This may have happened because an `Annotated` type alias using the `type` statement was used, or if the `Field()` function was attached to a single member of a union type.
  warnings.warn(
[2026-04-17T06:43:47+0200] [MainThread] [I] [toil.worker] Loaded body Job('CWLJob' finalize.12.average kind-CWLJob/instance-wv6h4s3c v1) from description 'CWLJob' finalize.12.average kind-CWLJob/instance-wv6h4s3c v1
[2026-04-17T06:43:47+0200] [MainThread] [W] [cwltool] You have specified '--preserve-entire-environment' while running a container which will override variables set in the container. This may break the container, be non-portable, and/or affect reproducibility.
[2026-04-17T06:43:47+0200] [MainThread] [I] [cwltool] Using local copy of Singularity image found in /project/ldv/Share/run-test/workflows/linc_target_master/workflows
[2026-04-17T06:43:47+0200] [MainThread] [I] [cwltool] [job finalize.12.average] /project/ldv/Share/cache/tmp/tmpk4fs1tml$ singularity \
    --quiet \
    run \
    --contain \
    --ipc \
    --cleanenv \
    --no-eval \
    --userns \
    --home \
    /project/ldv/Share/cache/tmp/tmpk4fs1tml:/kziiBA \
    --mount=type=bind,source=/tmp/tmp6gej7z0e,target=/tmp \
    --mount=type=bind,source=/project/ldv/Share/cache/tmp/tmp4_2_6137/L102600000241_168MHz_uv_pre-cal.ms,target=/var/lib/cwl/stg40984d48-8d2b-4be5-a35a-7dec66e67c00/L102600000241_168MHz_uv_pre-cal.ms,readonly \
    --pwd \
    /kziiBA \
    --net \
    --network \
    none \
    /project/ldv/Share/run-test/workflows/linc_target_master/workflows/astronrd_linc_latest.sif \
    /bin/sh \
    -c \
    DP3 'steps=[avg]' msin.orderms=False avg.type=average avg.freqstep=2 avg.timestep=2 numthreads=8 msin=/var/lib/cwl/stg40984d48-8d2b-4be5-a35a-7dec66e67c00/L102600000241_168MHz_uv_pre-cal.ms msin.datacolumn=DATA msout=L102600000241_168MHz_uv_pre-cal_wsclean.ms msout.storagemanager=Dysco > /project/ldv/Share/cache/tmp/tmpk4fs1tml/average.log 2> /project/ldv/Share/cache/tmp/tmpk4fs1tml/average_err.log
[2026-04-17T06:44:45+0200] [MainThread] [I] [cwltool] [job finalize.12.average] completed success
[2026-04-17T06:44:45+0200] [MainThread] [I] [toil.fileStores.abstractFileStore] LOG-TO-LEADER: CWL step complete: finalize.12.average
[2026-04-17T06:44:45+0200] [MainThread] [I] [toil.worker] Completed body for 'CWLJob' finalize.12.average kind-CWLJob/instance-wv6h4s3c v2
[2026-04-17T06:44:45+0200] [MainThread] [I] [toil.worker] Not chaining from job 'CWLJob' finalize.12.average kind-CWLJob/instance-wv6h4s3c v2
[2026-04-17T06:44:45+0200] [MainThread] [I] [toil.worker] Worker log can be found at /tmp/toilwf-12903c067f885a1083b21672a625c40b/df60. Set --cleanWorkDir to retain this log
[2026-04-17T06:44:45+0200] [MainThread] [I] [toil.worker] Finished running the chain of jobs on this node, we ran for a total of 59.355495 seconds