[2026-04-13T18:37:18+0200] [MainThread] [I] [toil.worker] ---TOIL WORKER OUTPUT LOG---
[2026-04-13T18:37:18+0200] [MainThread] [I] [toil] Running Toil version 9.1.2-355b72ba0e425619c0367562caf2a337078dba65 on host wn-la-10.spider.surfsara.nl.
[2026-04-13T18:37:18+0200] [MainThread] [I] [toil.worker] Working on job 'CWLJob' prep.getFWHM.getFWHM kind-CWLJob/instance-ruotf9en v1
/project/ldv/Software/executor-venv-toil9/lib/python3.9/site-packages/pydantic/_internal/_generate_schema.py:2249: UnsupportedFieldAttributeWarning: The 'default' attribute with value None was provided to the `Field()` function, which has no effect in the context it was used. 'default' is field-specific metadata, and can only be attached to a model field using `Annotated` metadata or by assignment. This may have happened because an `Annotated` type alias using the `type` statement was used, or if the `Field()` function was attached to a single member of a union type.
  warnings.warn(
[2026-04-13T18:37:20+0200] [MainThread] [I] [toil.worker] Loaded body Job('CWLJob' prep.getFWHM.getFWHM kind-CWLJob/instance-ruotf9en v1) from description 'CWLJob' prep.getFWHM.getFWHM kind-CWLJob/instance-ruotf9en v1
[2026-04-13T18:37:20+0200] [MainThread] [W] [cwltool] You have specified '--preserve-entire-environment' while running a container which will override variables set in the container. This may break the container, be non-portable, and/or affect reproducibility.
[2026-04-13T18:37:20+0200] [MainThread] [I] [cwltool] Using local copy of Singularity image found in /project/ldv/Share/run-test/workflows/linc_target_master/workflows
[2026-04-13T18:37:20+0200] [MainThread] [I] [cwltool] [job prep.getFWHM.getFWHM] /project/ldv/Share/cache/tmp/tmpo77y99jt$ singularity \
    --quiet \
    run \
    --contain \
    --ipc \
    --cleanenv \
    --no-eval \
    --userns \
    --home \
    /project/ldv/Share/cache/tmp/tmpo77y99jt:/asVbZN \
    --mount=type=bind,source=/tmp/tmpxgkcej4b,target=/tmp \
    --mount=type=bind,source=/project/ldv/Share/cache/tmp/tmppi8ozyvo/out/L102600000238_SB000_uv.MS,target=/var/lib/cwl/stg6266430b-305a-4dac-81f0-345dc804184c/L102600000238_SB000_uv.MS,readonly \
    --mount=type=bind,source=/project/ldv/Share/cache/tmp/tmp5ti20x0u/out/L102600000238_SB001_uv.MS,target=/var/lib/cwl/stg504627d5-5eaf-4273-abb4-47fb85399b04/L102600000238_SB001_uv.MS,readonly \
    --mount=type=bind,source=/project/ldv/Share/cache/tmp/tmp6rfl34ii/out/L102600000238_SB002_uv.MS,target=/var/lib/cwl/stg9902f3d6-1aee-4c90-a3a6-b955360de680/L102600000238_SB002_uv.MS,readonly \
    --mount=type=bind,source=/project/ldv/Share/cache/tmp/tmpwrt0ft3g/out/L102600000238_SB003_uv.MS,target=/var/lib/cwl/stg21d29da8-aed0-49c2-97e6-dfa4430dbc16/L102600000238_SB003_uv.MS,readonly \
    --mount=type=bind,source=/project/ldv/Share/cache/tmp/tmpnuxal1uw/out/L102600000238_SB004_uv.MS,target=/var/lib/cwl/stgf20a1c0b-fa42-4318-a715-fb2cd92f716c/L102600000238_SB004_uv.MS,readonly \
    --mount=type=bind,source=/project/ldv/Share/cache/tmp/tmp1ar5uz71/out/L102600000238_SB005_uv.MS,target=/var/lib/cwl/stg55199c69-0486-4484-a68c-3e2f660773d8/L102600000238_SB005_uv.MS,readonly \
    --pwd \
    /asVbZN \
    --net \
    --network \
    none \
    /project/ldv/Share/run-test/workflows/linc_target_master/workflows/astronrd_linc_latest.sif \
    python3 \
    getFWHM.py \
    /var/lib/cwl/stg6266430b-305a-4dac-81f0-345dc804184c/L102600000238_SB000_uv.MS \
    /var/lib/cwl/stg504627d5-5eaf-4273-abb4-47fb85399b04/L102600000238_SB001_uv.MS \
    /var/lib/cwl/stg9902f3d6-1aee-4c90-a3a6-b955360de680/L102600000238_SB002_uv.MS \
    /var/lib/cwl/stg21d29da8-aed0-49c2-97e6-dfa4430dbc16/L102600000238_SB003_uv.MS \
    /var/lib/cwl/stgf20a1c0b-fa42-4318-a715-fb2cd92f716c/L102600000238_SB004_uv.MS \
    /var/lib/cwl/stg55199c69-0486-4484-a68c-3e2f660773d8/L102600000238_SB005_uv.MS > /project/ldv/Share/cache/tmp/tmpo77y99jt/getFWHM.log 2> /project/ldv/Share/cache/tmp/tmpo77y99jt/getFWHM_err.log
[2026-04-13T18:37:22+0200] [MainThread] [I] [cwltool] [job prep.getFWHM.getFWHM] completed success
[2026-04-13T18:37:22+0200] [MainThread] [I] [toil.fileStores.abstractFileStore] LOG-TO-LEADER: CWL step complete: prep.getFWHM.getFWHM
[2026-04-13T18:37:22+0200] [MainThread] [W] [toil.fileStores.abstractFileStore] LOG-TO-LEADER: Job 'CWLJob' prep.getFWHM.getFWHM kind-CWLJob/instance-ruotf9en v3 used 1.91x more CPU than the requested 1 cores. Consider increasing the job's required CPU cores or limiting the number of processes/threads launched.
[2026-04-13T18:37:22+0200] [MainThread] [I] [toil.worker] Completed body for 'CWLJob' prep.getFWHM.getFWHM kind-CWLJob/instance-ruotf9en v3
[2026-04-13T18:37:22+0200] [MainThread] [I] [toil.worker] Not chaining from job 'CWLJob' prep.getFWHM.getFWHM kind-CWLJob/instance-ruotf9en v3
[2026-04-13T18:37:22+0200] [MainThread] [I] [toil.worker] Worker log can be found at /tmp/toilwf-c49245c7cc9058c8be1b22249a31dae9/fa62. Set --cleanWorkDir to retain this log
[2026-04-13T18:37:22+0200] [MainThread] [I] [toil.worker] Finished running the chain of jobs on this node, we ran for a total of 3.331079 seconds